Task

class Task

Bases: Config

Intersection tool, 2nd step

Perform the intersection of the RASSINE files by using the anchor location saved in the master RASSINE spectrum.

prog_: ClassVar[Optional[str]] = 'matching_anchors_filter'

Program name

ini_strict_sections_: ClassVar[Sequence[str]] = ['matching_anchors_filter']

Names of additional sections to parse in configuration files, unknown keys error

ini_relaxed_sections_: ClassVar[Sequence[str]] = ['matching']

Names of sections to parse in configuration files, with unknown keys ignored

env_prefix_: ClassVar[str] = 'RASSINE'

Prefix for automatically derived environment variable names

config: Sequence[pathlib.Path][Sequence[Path]]

Use the specified configuration files.

Files can be separated by commas/the command can be invoked multiple times.

root: Path[Path]

Root path of the data, used as a base for other relative paths

pickle_protocol: PickleProtocol[PickleProtocol]

Pickle protocol version to use

logging_level: LoggingLevel[LoggingLevel]

Logging level to use

master_tool: Path[Path]

Path to master tool file produced by matching_anchors_scan

process_master: Optional[pathlib.Path][Optional[Path]]

Path of the master spectrum file to process

The master spectrum is processed independently from other spectra

Note that process_master is a path relative to “root”

process_table: Optional[pathlib.Path][Optional[Path]]

Table of stacked spectra from which to read the individual spectrum names

The parameters process_table, process_pattern and process_indices must be all provided together

process_pattern: Optional[rassine.lib.data.PathPattern][Optional[PathPattern]]

Relative path (pattern) for the files to process

The parameters process_table, process_pattern and process_indices must be all provided together

process_indices: Sequence[int][Sequence[int]]

Indices of spectrum to process

The parameters process_table, process_pattern and process_indices must be all provided together

validate_file()

Validates the file parameters

Return type:

Optional[Err]

add_new: bool[bool]

Add anchor points that were not detected.

output_table: Optional[pathlib.Path][Optional[Path]]

Diagnostic information table

__init__(config, root, pickle_protocol, logging_level, master_tool, process_master, process_table, process_pattern, process_indices, add_new, output_table)